Order Clupeiformes
Superorder Ostariophysi
Series Anotophysi
Order Gonorynchiformes
Series Otophysi
Order Cypriniformes
-
Order Siluriformes
-
Infradivision Euteleostei（正真骨下区）
Superorder Protacanthopterygii（原棘鰭上目）
Order Argentiniformes（ニギス目）
Suborder Alepocephaloidei
Cohort Otocephala
Superorder Clupeomorpha
†Order Ellimmichthyiformes
Order Clupeiformes
Superorder Ostariophysi
Series Anotophysi
Order Gonorynchiformes
Series Otophysi
Subseries Cypriniphysi
Order Cypriniformes
Subseries Characiphysi
Order Characiformes
Subseries Siluriphysi
Order Siluriformes
Order Gymnotiformes
Superorder Alepocephali
Order Alepocephaliformes
Cohort Otocephala
Subcohort Clupei
Order Clupeiformes
Subcohort Ostariophysi
Section Anotophysa
Order Gonorynchiformes
Section Otophysa
Superorder Cypriniphysae
Order Cypriniformes
Superorder Characiphysae
Order Characiformes
Superorder Siluriphysae
Order Siluriformes
Order Gymnotiformes
ニシン目 Order Clupeiformes Suborder Denticipitoidei Family Denticipitidae ニシン亜目 Suborder Clupeoidei †Family Garganoclupeidae カタクチイワシ科 Family Engraulidae カタクチイワシ亜科 Subfamily Engraulinae インドアイノコイワシ属 Genus Stolephorus エツ亜科 Subfamily Coilinae エツ属 Genus Coilia ツマリエツ属 Genus Setipinna オオイワシ属 Genus Thryssa オキイワシ科 Family Chirocentridae ヒラ科 Family Pristigasteridae ヒラ属 Genus Ilisha キビナゴ科 Family Spratelloididae Family Dussumieriidae ニシン科 Family Clupeidae ニシン属 Genus Clupea Family Ehiravidae Family Alosidae Family Dorosomatidae ミズン属 Genus Herklotsichthys コノシロ属 Genus Konosirus ドロクイ属 Genus Nematalosa
畑・本村 (2020)はDussumieriidaeの和名を「ウルメイワシ科」としたが，Wang et al. (2022)の分類ではウルメイワシはニシン科に置かれる（ただし，incertae sedis付）ため，本科の和名は無しとしている．
次の3科からなる（Nelson et al., 2016; Betancur-R et al., 2017）．Chanidae内の亜科はNelson et al. (2016)に従った．一部淡水魚．
ネズミギス目 Order Gonorynchiformes サバヒー科 Family Chanidae †Subfamily Rubiesichthyinae サバヒー亜科 Subfamily Chaninae サバヒー属 Genus Chanos ネズミギス科 Family Gonorynchidae Family Kneriidae
カマツカ科 Family Gobionidae カマツカ亜科 Subfamily Gobioninae ツチフキ属 Genus Abbottina ゼゼラ属 Genus Biwia カマツカ属 Genus Pseudogobio ヒガイ亜科 Subfamily Danioninae タモロコ属 Genus Gnathopogon モツゴ属 Genus Pseudorasbora ムギツク属 Genus Pungtungia ヒガイ属 Genus Sarcocheilichthys Hemibarbus–Squalidus clade sensu Tang et al. 2011 ニゴイ属 Genus Hemibarbus スゴモロコ属 Genus Squalidus
Chen et al. (2023)はカマツカ亜科内のPseudogobionini groupについて次のように整理している．
クセノキプリス科 Family Xenocyprididae Subfamily Opsariichthyinae カワムツ属 Genus Nipponocypris ハス属 Genus Opsariichthys Subfamily Xenocypridinae ヒナモロコ属 Genus Aphyocypris ソウギョ属 Genus Ctenopharyngodon カワイワシ属 Genus Hemiculter カワバタモロコ属 Genus Hemigrammocypris ハクレン属 Genus Hypophthalmichthys ワタカ属 Genus Ischikauia Genus Megalobrama アオウオ属 Genus Mylopharyngodon
現生種は次の9科からなる（Betancur-R et al., 2017; Tan & Armbruster, 2018）．Botiidae内の亜科についてはTan & Armbruster (2018)を参照．すべて淡水魚．
ドジョウ亜目 Suborder Cobitoidei †Family Jianghanichthyidae アユモドキ科 Family Botiidae Subfamily Botiinae Subfamily Leptobotiinae アユモドキ属 Genus Parabotia Family Vaillantellidae ドジョウ科 Family Cobitidae シマドジョウ属 Genus Cobitis ドジョウ属 Genus Misgurnus タニノボリ科 Family Balitoridae Family Gastromyzontidae フクドジョウ科 Family Nemacheilidae フクドジョウ属 Genus Barbatula ホトケドジョウ属 Genus Lefua Family Barbuccidae Family Ellopostomatidae Family Serpenticobitidae
Order Siluriformes
†Family Andinichthyidae
†Suborder Hypsidoroidei
†Family Hypsidoridae
Suborder Cetopsoidei
Family Cetopsidae
Suborder Loricarioidei
Family Trichomycteridae
Family Nematogenyidae
Family Callichthyidae
Family Scoloplacidae
Family Astroblepidae
Family Loricariidae
Suborder Diplomystoidei
Family Diplomystidae
†Family Bachmanniidae
Suborder Siluroidei
Family Horabagridae
Family Siluridae
Kryptoglanis
Family Austroglanididae
Family Pangasiidae
Family Chacidae
Family Plotosidae
Family Bagridae
Family Ritidae
Family Amphiliidae
Family Malapteruridae
Family Mochokidae
Family Schilbeidae
Family Ailiidae
Family Auchenoglanididae
Family Claroteidae
Family Lacantuniidae
Superfamily Sisoroidea
Family Akysidae
Family Amblycipitidae
Family Sisoridae
Family Erethistidae
Superfamily Clarioidea
Family Clariidae
Family Heteropneustidae
Superfamily Arioidea
Family Anchariidae
Family Ariidae
Superfamily Doradoidea
Family Aspredinidae
Family Doradidae
Family Auchenipteridae
Superfamily Ictaluroidea
Family Cranoglanididae
Family Ictaluridae
Superfamily Pimelodoidea
Family Heptapteridae
Family Pimelodidae
Family Pseudopimelodidae
本サイトでは次のように整理した．基本的にNelson et al. (2016)に従った．一部淡水魚．ロリカリア科内の亜科はNelson et al. (2016)に、ハマギギ科内の亜科・族・亜族はMarceniuk et al. (2023)にそれぞれ従った．
ナマズ目 Order Siluriformes †Family Andinichthyidae †Suborder Hypsidoroidei †Family Hypsidoridae Suborder Cetopsoidei Family Cetopsidae Suborder Loricarioidei Family Trichomycteridae Family Nematogenyidae Family Callichthyidae Family Scoloplacidae Family Astroblepidae ロリカリア科 Family Loricariidae Subfamily Ancistrinae Subfamily Delturinae Subfamily Hypoptopomatinae Subfamily Hypostominae マダラロリカリア属 Genus Pterygoplichthys Subfamily Lithogeneinae ロリカリア亜科 Subfamily Loricariinae Subfamily Neoplecostominae Suborder Diplomystoidei Family Diplomystidae †Family Bachmanniidae ナマズ亜目 Suborder Siluroidei Family Horabagridae ナマズ科 Family Siluridae ナマズ属 Genus Silurus Family Kryptoglanidae Family Austroglanididae Family Pangasiidae Family Chacidae ゴンズイ科 Family Plotosidae ギギ科 Family Bagridae ギバチ属 Genus Tachysurus Family Ritidae Family Amphiliidae デンキナマズ科 Family Malapteruridae Family Mochokidae Family Schilbeidae Family Ailiidae Family Auchenoglanididae Family Claroteidae Family Lacantuniidae Superfamily Sisoroidea Family Akysidae アカザ科 Family Amblycipitidae アカザ属 Genus Liobagrus Family Sisoridae Family Erethistidae ヒレナマズ上科 Superfamily Clarioidea ヒレナマズ科 Family Clariidae ヒレナマズ属 Genus Clarias Family Heteropneustidae ハマギギ上科 Superfamily Arioidea Family Anchariidae ハマギギ科 Family Ariidae Subfamily Ariinae Tribe Cathoropsini Tribe Genidentini Tribe Sciadeini Tribe Ariini オオサカハマギギ属 Genus Netuma Genus Plicofollis Subtribe Ariina ハマギギ属 Genus Arius Subtribe Doiichthyina Subfamily Bagreinae Subfamily Galeichthyinae Superfamily Doradoidea Family Aspredinidae Family Doradidae Family Auchenipteridae アメリカナマズ上科 Superfamily Ictaluroidea Family Cranoglanididae アメリカナマズ科 Family Ictaluridae アメリカナマズ属 Genus Ictalurus Superfamily Pimelodoidea Family Heptapteridae Family Pimelodidae Family Pseudopimelodidae
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